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In central Tokyo, the Yayoi and Takehisa Museums are dedicated to two Japanese artists of the 1910s and 1920s.
Hakone is home to some of Japan's best museums. And in fact, six of them are (in my opinion) world class.
Tokyo has a wide range of art museums, and you can find anything to suit your taste, modern or traditional, by Japanese or international artists.
Japan's former capital Kyoto is home to dozens of art museums: some large ones, and a whole host of intimate smaller museums, often focusing on a particular art or craft form.
The Grutt Pass is the best value way to see 79 museums, art galleries and zoos across Tokyo.

Near Mishima on the Izu Peninsula in Japan's Shizuoka prefecture, the Clematis Garden is an attractive cluster of art museums, shops and restaurants

Fukuyama Castle Park is large enough to hold a castle and three museums. It is conveniently located in front of the Fukuyama Station.
A short walk from the train station and you can feel the artistic side of Machida at two local museums.